Links

Related Links:

RNA-protein related

catRAPID: Software for predicting protein-RNA interactions

http://tartaglialab.crg.cat/index.html

RNA-related:

PRIDB: Protein-RNA Interaction Database

http://pridb.gdcb.iastate.edu

RNABindR: Software for predicting RNA Binding Residues in proteins

http://bindr2.gdcb.iastate.edu/RNABindR/

BindN: Software for predicting DNA and RNA binding residues in proteins

http://bioinfo.ggc.org/bindn/

PiRaNhA: Software for predicting RNA binding residues in proteins

http://www.bioinformatics.sussex.ac.uk/PIRANHA/

RsiteDB: RNA Binding Sites DataBase

http://bioinfo3d.cs.tau.ac.il/RsiteDB/

FR3D: Find RNA 3D

http://rna.bgsu.edu/FR3D/

SCOR: Structural Classification Of RNA

http://scor.berkeley.edu/scor.html

RNASTRAND: The RNA secondary STRucture and statistical ANalysis Database

http://www.rnasoft.ca/strand/

Protein-related:

ProNuc: Protein-Nucleic Acid Recognition Database

http://gibk26.bse.kyutech.ac.jp/jouhou/pronuc/pronuc.html

BIPA: Biological Interaction database for Protein-nucleic Acid

http://mordred.bioc.cam.ac.uk/bipa/

ProSite: Database of protein domains, families and functional sites

http://ca.expasy.org/prosite/

InterPro: Integrated Database of Predictive Protein "Signatures"

http://www.ebi.ac.uk/interpro/

ProtinDB: PROTein-protein INterface residues Database

http://protindb.cs.iastate.edu/index.py

Iowa State University

RNA-Protein Interaction Prediction (RPISeq)

Dobbs and Honavar Laboratories

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