Iowa State University

Iowa State University

Protein-RNA Interface Database (PRIDB) v1.0

Dobbs and Honavar Laboratories

The Protein-RNA Interface Database (PRIDB) is a comprehensive collection of all protein-RNA complexes from the Protein Data Bank (PDB).

Simple Search:
PDB ID (e.g. 1ASY) Protein Name (e.g. tRNA synthetase )
Advanced Search

If you have your own file in PDB format for which you would like to know the interface residues, please click here


If you would like to predict RNA binding residues, click here
Please cite: Benjamin A. Lewis, Rasna R. Walia, Michael Terribilini, Jeff Ferguson, Charles Zheng, Vasant Honavar, and Drena Dobbs. PRIDB: a protein-RNA interface database. Nucl. Acids Res. (2011) 39 (suppl. 1): D277-D282. doi:10.1093/nar/gkq1108

DSRNA binding protein - PDB ID 1DI2
DSRNA binding protein - PDB ID 1DI2