Iowa State University

Iowa State University

Protein-RNA Interface Database (PRIDB) v2.0

Dobbs and Honavar Laboratories

Query parameters:

PDB ID: 1EFW
Interaction definition: Distance-based, 5.0Å cutoff
Look up in the Protein Data Bank
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Query Results:

Minimize 1EFW
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1EFW: 2 protein chains, 2 RNA chains
Complex Name: Crystal structure of aspartyl-tRNA synthetase from Thermus thermophilus complexed to tRNAasp from Escherichia coli
Resolution:3 Å
Solving Method:X-RAY DIFFRACTION

Interactions:


Prosite -

Chain: A, Molecule: ASPARTYL-TRNA SYNTHETASE
M R R T H Y A G S L R E T H V G E E V V L E G W V N R R R D L G G L I F L D L R D R E G L V Q L V A H P A S P A Y A T A E R V R P E W V V R A K G L V R L R P E P N P R L A T G R V E V E L S A L E V L A E A K T P P F P V D A G W R G E E E K E A S E E L R L K Y R Y L D L R R R R M Q E N L R L R H R V I K A I W D F L D R E G F V Q V E T P F L T K S T P E G A R D F L V P Y R H E P G L F Y A L P Q S P Q L F K Q M L M V A G L D R Y F Q I A R C F R D E D L R A D R Q P D F T Q L D L E M S F V E V E D V L E L N E R L M A H V F R E A L G V E L P L P F P R L S Y E E A M E R Y G S D K P D L R F G L E L K E V G P L F R Q S G F R V F Q E A E S V K A L A L P K A L S R K E V A E L E E V A K R H K A Q G L A W A R V E E G G F S G G V A K F L E P V R E A L L Q A T E A R P G D T L L F V A G P R K V A A T A L G A V R L R A A D L L G L K R E G F R F L W V V D F P L L E W D E E E E A W T Y M H H P F T S P H P E D L P L L E K D P G R V R A L A Y D L V L N G V E V G G G S I R I H D P R L Q A R V F R L L G I G E E E Q R E K F G F F L E A L E Y G A P P H G G I A W G L D R L L A L M T G S P S I R E V I A F P K N K E G K D P L T G A P S P V P E E Q L R E L G L M V V R P
Prosite -

Chain: B, Molecule: ASPARTYL-TRNA SYNTHETASE
M R R T H Y A G S L R E T H V G E E V V L E G W V N R R R D L G G L I F L D L R D R E G L V Q L V A H P A S P A Y A T A E R V R P E W V V R A K G L V R L R P E P N P R L A T G R V E V E L S A L E V L A E A K T P P F P V D A G W R G E E E K E A S E E L R L K Y R Y L D L R R R R M Q E N L R L R H R V I K A I W D F L D R E G F V Q V E T P F L T K S T P E G A R D F L V P Y R H E P G L F Y A L P Q S P Q L F K Q M L M V A G L D R Y F Q I A R C F R D E D L R A D R Q P D F T Q L D L E M S F V E V E D V L E L N E R L M A H V F R E A L G V E L P L P F P R L S Y E E A M E R Y G S D K P D L R F G L E L K E V G P L F R Q S G F R V F Q E A E S V K A L A L P K A L S R K E V A E L E E V A K R H K A Q G L A W A R V E E G G F S G G V A K F L E P V R E A L L Q A T E A R P G D T L L F V A G P R K V A A T A L G A V R L R A A D L L G L K R E G F R F L W V V D F P L L E W D E E E E A W T Y M H H P F T S P H P E D L P L L E K D P G R V R A L A Y D L V L N G V E V G G G S I R I H D P R L Q A R V F R L L G I G E E E Q R E K F G F F L E A L E Y G A P P H G G I A W G L D R L L A L M T G S P S I R E V I A F P K N K E G K D P L T G A P S P V P E E Q L R E L G L M V V R P
Chain: C, Molecule: ASPARTYL-TRNA
G G A G C G G 4SU A G U U C A G H2U C G G H2U H2U A G A A U A C C U G C C U QUO U C 2MA C G C A G G G G U C G C G G G 5MU PSU C G A G U C C C G PSU C C G U U C C
Chain: D, Molecule: ASPARTYL-TRNA
G G A G C G G 4SU A G U U C A G H2U C G G H2U H2U A G A A U A C C U G C C U QUO U C 2MA C G C A G G G G U C G C G G G 5MU PSU C G A G U C C C G PSU C C G U U C C


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