Iowa State University

Iowa State University

Protein-RNA Interface Database (PRIDB) v2.0

Dobbs and Honavar Laboratories

Precalculated Datasets:

Dataset Download List of PDB IDs Reference
RB106* (previously known as RB109) RB109 Non-redundant set of 109 RNA-binding protein chains from the PDB extracted June 2004. Click here for more information. Terribilini et al. RNA 2006
RB144* (previously known as RB147) RB147 Non-redundant set of 147 RNA-binding protein chains from the PDB extracted January 2006. Click here for more information. Terribilini et al. NAR 2007
RB199 RB199 Non-redundant set of 199 RNA-binding protein chains from the PDB extracted May 2010. Click here for the list of PDB IDs and chains contained in RB199. Walia et al, 2012
RB344 RB344 Non-redundant set of 344 RNA-binding protein chains from the PDB extracted March 2013. Click here for the list of PDB IDs and functional class annotations contained in RB344. Lewis et al., in preparation

Complete PRIDB Dataset (RB1179)

* As noted by Maetschke et al. (2009), BMC Bioinformatics, http://www.biomedcentral.com/1471-2105/10/341, two previously published versions of the RB106 and RB144 datasets provided here were found to contain chains that should not have been included because they were shorter than 40 residues. These mistakes were corrected in the revised benchmark datasets, RB106 (formerly RB109, but with chains V of IFJG, G of 1JJ2 and F of 2BBV omitted); RB 144 (same as former RB147, but with chains V of 1FJG, G of IVQO and 5 of 1W2B omitted).


Custom Datasets:
Please enter a list of PDB IDs separated by commas from which to calculate a dataset of protein-RNA interface atoms:

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