Department of Genetics, Development and Cell Biology

Dobbs Lab

PRIDB: The Protein-RNA Interaction Database (2011)
Lewis, B.A., Walia, R.R., Terribilini, M., Honavar, V., & Dobbs, D.
http://pridb.gdcb.iastate.edu/

ProtInDB: Protein-protein Interface Residues Database
Jordan, R., Wu, F., Dobbs, D., & Honavar, V.
http://ppidb.cs.iastate.edu/index.py

RNABindR: Software for the prediction of RNA Binding Residues in Proteins (2006)
Terribilini, M., Honavar, V., & Dobbs, D. RNABindR is no longer active.
http://pridb.gdcb.iastate.edu/rnabindr.html

RNABindRPlus: RNABindRPlus predicts RNA-binding residues from protein sequences by combining the output from a Support Vector Machine (SVM) classifier with the output from a Homology-based method.
Walia, R. R., Xue, L. C., Wilkins, K., El-Manzalawy, Y., Dobbs, D., & Honavar, V.
http://einstein.cs.iastate.edu/RNABindRPlus/index.html

RNABindR v2.0: Updated software for the prediction of RNA Binding Residues in Proteins (2012)
Walia, R.R., Caragea, C., Lewis, B.A., Towfic, F., Terribilini, M., El-Manzalawy, Y., Dobbs, D., & Honavar, V.
http://einstein.cs.iastate.edu/RNABindR/

RPISeq: Software for the prediction of RNA-protein interactions using only sequence information (2011)
Muppirala, U.K., Honavar, V., & Dobbs, D.
http://pridb.gdcb.iastate.edu/RPISeq/

ZFNGenome: A comprehensive resource for locating Zinc Finger Nuclease target sites in model organisms (2012)
Reyon, D., Kirkpatrick, J., Sander, J., Voytas, D., Joung, J., Dobbs, D., & Coffman, C.
http://bindr.gdcb.iastate.edu/ZFNGenome/